C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, beta 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000134020 actb2-003 ENSDARG00000037870 7955 - 3:40521661-40524560 processed_transcript

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverENSDART00000134020
Transcript ID Liver
ENSDART00000134020 200.384±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000039631 Acta2-201 protein_coding Mus_musculus 0 601
ENSMUST00000062147 Actg1-006 protein_coding Mus_musculus 0 224
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 715
ENSMUST00000075161 Actg2-001 protein_coding Mus_musculus 0 560
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 743
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 688
ENSMUST00000089616 Actg1-009 protein_coding Mus_musculus 0 292
ENSMUST00000099636 Actg-ps1-201 processed_pseudogene Mus_musculus 0 442
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 809
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 715
ENSMUST00000106216 Actb-006 protein_coding Mus_musculus 1e-38 163
ENSMUST00000118518 Gm12003-001 processed_pseudogene Mus_musculus 0 398
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 743
ENSMUST00000120059 Gm5388-001 processed_pseudogene Mus_musculus 0 571
ENSMUST00000120078 Gm16423-001 processed_pseudogene Mus_musculus 1.4013e-45 187
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 726
ENSMUST00000121731 Actg2-002 protein_coding Mus_musculus 0 560
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 691
ENSMUST00000140208 Gm8464-002 processed_transcript Mus_musculus 0 579
ENSMUST00000146697 Gm8464-001 transcribed_processed_pseudogene Mus_musculus 0 579
ENSMUST00000149888 Gm14747-001 processed_pseudogene Mus_musculus 7.9874e-44 182
ENSMUST00000151942 Gm4750-001 transcribed_processed_pseudogene Mus_musculus 0 579
ENSMUST00000152262 Gm4750-002 processed_transcript Mus_musculus 0 579
ENSMUST00000163829 Actb-004 protein_coding Mus_musculus 0 189
ENSMUST00000167386 Actb-003 processed_transcript Mus_musculus 0 505
ENSMUST00000167721 Actb-002 protein_coding Mus_musculus 0 774
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 579
ENSMUST00000184255 Gm17087-001 translated_processed_pseudogene Mus_musculus 0 544
ENST00000331789 ACTB-001 protein_coding Homo_sapiens 0 815
ENST00000331925 ACTG1-001 protein_coding Homo_sapiens 0 793
ENST00000345517 ACTG2-001 protein_coding Homo_sapiens 0 678
ENST00000409624 ACTG2-002 protein_coding Homo_sapiens 0 678
ENST00000409731 ACTG2-008 protein_coding Homo_sapiens 0 678
ENST00000415776 ACTG1P2-001 processed_pseudogene Homo_sapiens 0 619
ENST00000415794 ACTG1P1-001 processed_pseudogene Homo_sapiens 0 555
ENST00000423183 ACTG1P12-001 processed_pseudogene Homo_sapiens 0 597
ENST00000423783 POTENP-001 processed_pseudogene Homo_sapiens 0 473
ENST00000425411 ACTG1P11-001 processed_pseudogene Homo_sapiens 0 619
ENST00000425660 ACTB-002 nonsense_mediated_decay Homo_sapiens 0 785
ENST00000428275 ACTG1P10-001 processed_pseudogene Homo_sapiens 0 494
ENST00000431536 RP4-706L14.2-001 processed_pseudogene Homo_sapiens 0 501
ENST00000438902 ACTG2-005 nonsense_mediated_decay Homo_sapiens 0 678
ENST00000440793 AC023672.1-001 processed_pseudogene Homo_sapiens 0 189
ENST00000457622 ACTG1P9-001 processed_pseudogene Homo_sapiens 0 575
ENST00000462494 ACTB-003 retained_intron Homo_sapiens 0 787
ENST00000473257 ACTB-011 processed_transcript Homo_sapiens 0 595
ENST00000477812 ACTB-007 retained_intron Homo_sapiens 0 377
ENST00000484841 ACTB-005 retained_intron Homo_sapiens 0 680
ENST00000493945 ACTB-004 retained_intron Homo_sapiens 0 601
ENST00000502306 CTD-2313D3.1-001 processed_pseudogene Homo_sapiens 0 425
ENST00000507366 CTC-512J14.7-001 processed_pseudogene Homo_sapiens 0 556
ENST00000512165 CH17-12M21.1-001 processed_pseudogene Homo_sapiens 0 540
ENST00000515712 ACTBP2-001 processed_pseudogene Homo_sapiens 0 649
ENST00000570019 RP11-602M11.3-001 processed_pseudogene Homo_sapiens 0 494
ENST00000572105 ACTG1-015 nonsense_mediated_decay Homo_sapiens 0 758
ENST00000573283 ACTG1-003 protein_coding Homo_sapiens 0 793
ENST00000574671 ACTG1-008 retained_intron Homo_sapiens 0 758
ENST00000575087 ACTG1-002 protein_coding Homo_sapiens 0 793
ENST00000575842 ACTG1-012 protein_coding Homo_sapiens 0 793
ENST00000576209 ACTG1-009 retained_intron Homo_sapiens 0 793
ENST00000576544 ACTG1-006 nonsense_mediated_decay Homo_sapiens 0 793
ENST00000576917 ACTG1-004 retained_intron Homo_sapiens 0 237
ENST00000615544 ACTG1-201 protein_coding Homo_sapiens 0 793

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