C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 1, pseudogene 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119503 Hmgb1-ps6-001 ENSMUSG00000080928 10090 - 16:31991253-31991868 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000119503
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000119503 0.153±0.01 0.105±0.07 0.151±0.08 0.245±0.06 0.194±0.00 0.117±0.04 0.074±0.00 0.108±0.09 0.183±0.00 0.110±0.05 0.194±0.05 0.451±0.18 1.790±2.79

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255320 HMGB1P5-001 transcribed_processed_pseudogene Homo_sapiens 0 761
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 0 623
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 0 771
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 0 771
ENST00000395823 HMGB1P10-001 processed_pseudogene Homo_sapiens 0 701
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 0 623
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 0 771
ENST00000402555 HMGB1P20-001 processed_pseudogene Homo_sapiens 0 538
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 0 771
ENST00000406019 HMGB1P13-001 processed_pseudogene Homo_sapiens 0 516
ENST00000413899 HMGB1P11-001 processed_pseudogene Homo_sapiens 0 638
ENST00000429856 HMGB1P9-001 processed_pseudogene Homo_sapiens 0 632
ENST00000437242 HMGB1P31-001 processed_pseudogene Homo_sapiens 0 416
ENST00000439613 HMGB1P37-001 processed_pseudogene Homo_sapiens 0 582
ENST00000447155 HMGB1P16-001 processed_pseudogene Homo_sapiens 0 516
ENST00000451497 HMGB1P5-002 processed_transcript Homo_sapiens 0 584
ENST00000452520 HMGB1P26-001 processed_pseudogene Homo_sapiens 0 582
ENST00000453854 HMGB1P15-001 processed_pseudogene Homo_sapiens 0 387
ENST00000455362 HMGB1P4-001 processed_pseudogene Homo_sapiens 0 623
ENST00000459868 FMO1-004 processed_transcript Homo_sapiens 0 209
ENST00000468384 HMGB1-007 processed_transcript Homo_sapiens 0 226
ENST00000487709 HMGB1P36-001 processed_pseudogene Homo_sapiens 0 390
ENST00000490788 HMGB1-008 processed_transcript Homo_sapiens 0 285
ENST00000522557 HMGB1P1-001 processed_pseudogene Homo_sapiens 0 730
ENST00000525121 RP11-701I24.1-001 processed_pseudogene Homo_sapiens 0 420
ENST00000558211 HMGB1P8-001 processed_pseudogene Homo_sapiens 0 244
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 743
ENST00000611897 RP11-19G24.3-002 processed_transcript Homo_sapiens 8.96831e-44 180
ENST00000615653 RP11-19G24.3-001 transcribed_processed_pseudogene Homo_sapiens 0 680

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