C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, gamma 1 pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000415794 ACTG1P1-001 ENSG00000178631 9606 + 3:139493809-139494937 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000415794
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000415794 0.169±0.00 0.503±0.00 0.327±0.00 0.261±0.07 0.174±0.14 0.131±0.11 0.138±0.01 0.125±0.03 0.262±0.22 0.051±0.00 0.028±0.00 0.263±0.15 0.035±0.00 0.444±0.11

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 952
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 948
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 937
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 931
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 894
ENSDART00000141737 actb2-001 protein_coding Danio_rerio 0 841
ENSDART00000055194 actb2-007 protein_coding Danio_rerio 0 841
ENSMUST00000120059 Gm5388-001 processed_pseudogene Mus_musculus 0 778
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 761
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 761
ENSDART00000054987 actb1-001 protein_coding Danio_rerio 0 754
ENSMUST00000034453 Acta1-201 protein_coding Mus_musculus 0 743
ENSMUST00000167721 Actb-002 protein_coding Mus_musculus 0 730
ENSDART00000055136 actc1b-201 protein_coding Danio_rerio 0 717
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 658
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 645
ENSMUST00000118518 Gm12003-001 processed_pseudogene Mus_musculus 0 641
ENSDART00000062370 actc1a-001 protein_coding Danio_rerio 0 636
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 616
ENSDART00000114549 hm:zewp0073-201 protein_coding Danio_rerio 0 614
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 608
ENSDART00000133319 actb1-005 protein_coding Danio_rerio 0 569
ENSDART00000134020 actb2-003 processed_transcript Danio_rerio 0 555
ENSDART00000148290 actb2-002 nonsense_mediated_decay Danio_rerio 0 531
ENSMUST00000146697 Gm8464-001 transcribed_processed_pseudogene Mus_musculus 0 521
ENSMUST00000140208 Gm8464-002 processed_transcript Mus_musculus 0 521
ENSMUST00000151942 Gm4750-001 transcribed_processed_pseudogene Mus_musculus 0 521
ENSMUST00000152262 Gm4750-002 processed_transcript Mus_musculus 0 521
ENSMUST00000128055 Actg1-005 protein_coding Mus_musculus 0 459
ENSMUST00000062147 Actg1-006 protein_coding Mus_musculus 0 377
ENSMUST00000099636 Actg-ps1-201 processed_pseudogene Mus_musculus 0 357
ENSMUST00000149888 Gm14747-001 processed_pseudogene Mus_musculus 0 307
ENSMUST00000165006 Gm17228-001 processed_pseudogene Mus_musculus 0 300
ENSMUST00000106216 Actb-006 protein_coding Mus_musculus 0 287
ENSMUST00000156343 Actg1-004 retained_intron Mus_musculus 0 252
ENSMUST00000141406 Actg1-007 retained_intron Mus_musculus 0 252
ENSMUST00000089616 Actg1-009 protein_coding Mus_musculus 0 239
ENSMUST00000165629 Actb-008 retained_intron Mus_musculus 0 231
ENSMUST00000167386 Actb-003 processed_transcript Mus_musculus 0 231
ENSMUST00000164765 Actb-005 retained_intron Mus_musculus 0 195
ENSMUST00000119663 Gm4760-001 processed_pseudogene Mus_musculus 9.99967e-42 174
ENSMUST00000144868 Actg1-003 retained_intron Mus_musculus 7e-30 135

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