C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: POTE ankyrin domain family, member N, pseudogene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000423783 POTENP-001 ENSG00000226359 9606 + 17:17242010-17242886 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonHeartLungOvaryPlacentaTestisENST00000423783
Transcript ID Adrenal Colon Heart Lung Ovary Placenta Testis
ENST00000423783 0.260±0.00 0.529±0.00 0.042±0.00 0.369±0.00 0.074±0.01 0.061±0.00 0.086±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00040N CIL_00040N_0001 CGP 17:17212212-17281293
CIL_0009A0 CIL_0009A0_0001 VISTA 17:17235872-17840873

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 789
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 743
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 743
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 732
ENSDART00000141737 actb2-001 protein_coding Danio_rerio 0 693
ENSDART00000055194 actb2-007 protein_coding Danio_rerio 0 693
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 680
ENSMUST00000167721 Actb-002 protein_coding Mus_musculus 0 656
ENSDART00000054987 actb1-001 protein_coding Danio_rerio 0 647
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 619
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 619
ENSMUST00000120059 Gm5388-001 processed_pseudogene Mus_musculus 0 593
ENSMUST00000034453 Acta1-201 protein_coding Mus_musculus 0 582
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 534
ENSMUST00000118518 Gm12003-001 processed_pseudogene Mus_musculus 0 521
ENSDART00000055136 actc1b-201 protein_coding Danio_rerio 0 514
ENSMUST00000184255 Gm17087-001 translated_processed_pseudogene Mus_musculus 0 484
ENSDART00000133319 actb1-005 protein_coding Danio_rerio 0 484
ENSMUST00000039631 Acta2-201 protein_coding Mus_musculus 0 483
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 475
ENSDART00000134020 actb2-003 processed_transcript Danio_rerio 0 473
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 457
ENSMUST00000146697 Gm8464-001 transcribed_processed_pseudogene Mus_musculus 0 455
ENSMUST00000140208 Gm8464-002 processed_transcript Mus_musculus 0 455
ENSMUST00000151942 Gm4750-001 transcribed_processed_pseudogene Mus_musculus 0 455
ENSMUST00000152262 Gm4750-002 processed_transcript Mus_musculus 0 455
ENSDART00000148290 actb2-002 nonsense_mediated_decay Danio_rerio 0 444
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 438
ENSDART00000066430 acta2-201 protein_coding Danio_rerio 0 429
ENSDART00000149990 acta2-001 protein_coding Danio_rerio 0 429
ENSMUST00000062147 Actg1-006 protein_coding Mus_musculus 0 333
ENSMUST00000128055 Actg1-005 protein_coding Mus_musculus 0 331
ENSMUST00000119663 Gm4760-001 processed_pseudogene Mus_musculus 0 322
ENSMUST00000099636 Actg-ps1-201 processed_pseudogene Mus_musculus 0 300
ENSMUST00000149888 Gm14747-001 processed_pseudogene Mus_musculus 0 272
ENSMUST00000165006 Gm17228-001 processed_pseudogene Mus_musculus 0 263
ENSMUST00000089616 Actg1-009 protein_coding Mus_musculus 0 248
ENSMUST00000106216 Actb-006 protein_coding Mus_musculus 0 220
ENSMUST00000156343 Actg1-004 retained_intron Mus_musculus 7e-34 148
ENSMUST00000141406 Actg1-007 retained_intron Mus_musculus 9e-33 145
ENSMUST00000164765 Actb-005 retained_intron Mus_musculus 1e-31 141
ENSMUST00000165629 Actb-008 retained_intron Mus_musculus 1e-31 141
ENSMUST00000167386 Actb-003 processed_transcript Mus_musculus 4e-31 139
ENSMUST00000119942 Gm11718-001 processed_pseudogene Mus_musculus 2e-20 104
ENSMUST00000144868 Actg1-003 retained_intron Mus_musculus 0.00000009 62

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