C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, gamma 1 pseudogene 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000428275 ACTG1P10-001 ENSG00000231340 9606 - X:53142832-53143913 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000428275
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000428275 0.570±0.00 1.261±0.00 0.914±0.00 0.437±0.05 1.013±0.71 0.647±0.34 0.272±0.12 0.176±0.00 0.463±0.34 0.286±0.20 0.162±0.00 0.868±0.75 0.183±0.00 0.328±0.22

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 874
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 832
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 832
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 832
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 778
ENSMUST00000120059 Gm5388-001 processed_pseudogene Mus_musculus 0 776
ENSMUST00000034453 Acta1-201 protein_coding Mus_musculus 0 737
ENSDART00000141737 actb2-001 protein_coding Danio_rerio 0 728
ENSDART00000055194 actb2-007 protein_coding Danio_rerio 0 728
ENSDART00000054987 actb1-001 protein_coding Danio_rerio 0 719
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 688
ENSDART00000133319 actb1-005 protein_coding Danio_rerio 0 686
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 664
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 664
ENSMUST00000146697 Gm8464-001 transcribed_processed_pseudogene Mus_musculus 0 616
ENSMUST00000140208 Gm8464-002 processed_transcript Mus_musculus 0 616
ENSMUST00000151942 Gm4750-001 transcribed_processed_pseudogene Mus_musculus 0 616
ENSMUST00000152262 Gm4750-002 processed_transcript Mus_musculus 0 616
ENSDART00000055136 actc1b-201 protein_coding Danio_rerio 0 614
ENSMUST00000167721 Actb-002 protein_coding Mus_musculus 0 580
ENSMUST00000128055 Actg1-005 protein_coding Mus_musculus 0 575
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 547
ENSMUST00000090269 Actc1-001 protein_coding Mus_musculus 0 532
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 531
ENSMUST00000121731 Actg2-002 protein_coding Mus_musculus 0 521
ENSMUST00000075161 Actg2-001 protein_coding Mus_musculus 0 521
ENSMUST00000118518 Gm12003-001 processed_pseudogene Mus_musculus 0 512
ENSDART00000134020 actb2-003 processed_transcript Danio_rerio 0 494
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 486
ENSDART00000148290 actb2-002 nonsense_mediated_decay Danio_rerio 0 453
ENSMUST00000141904 Actg2-005 protein_coding Mus_musculus 0 444
ENSMUST00000119663 Gm4760-001 processed_pseudogene Mus_musculus 0 425
ENSMUST00000106216 Actb-006 protein_coding Mus_musculus 0 403
ENSMUST00000165006 Gm17228-001 processed_pseudogene Mus_musculus 0 388
ENSMUST00000167386 Actb-003 processed_transcript Mus_musculus 0 385
ENSDART00000148067 actb1-003 processed_transcript Danio_rerio 0 375
ENSMUST00000152029 Actg2-004 protein_coding Mus_musculus 0 372
ENSMUST00000119420 Gm4918-001 processed_pseudogene Mus_musculus 0 366
ENSMUST00000156343 Actg1-004 retained_intron Mus_musculus 0 348
ENSMUST00000141406 Actg1-007 retained_intron Mus_musculus 0 344
ENSMUST00000165629 Actb-008 retained_intron Mus_musculus 0 302
ENSDART00000141407 actb1-002 protein_coding Danio_rerio 0 302
ENSMUST00000099636 Actg-ps1-201 processed_pseudogene Mus_musculus 0 285
ENSMUST00000164765 Actb-005 retained_intron Mus_musculus 0 244
ENSMUST00000124933 Actg2-006 processed_transcript Mus_musculus 0 219
ENSMUST00000163829 Actb-004 protein_coding Mus_musculus 2.99878e-43 180
ENSMUST00000144868 Actg1-003 retained_intron Mus_musculus 1.00053e-42 178
ENSMUST00000062147 Actg1-006 protein_coding Mus_musculus 9.99967e-42 174
ENSMUST00000149888 Gm14747-001 processed_pseudogene Mus_musculus 2e-25 121

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