C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000441772 AC139143.2-001 ENSG00000230080 9606 - 11:1802889-1804095 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLungMuscleTestisENST00000441772
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Lung Muscle Testis
ENST00000441772 0.133±0.00 0.084±0.00 0.148±0.00 0.071±0.00 0.106±0.00 0.045±0.00 0.149±0.00 0.053±0.00 0.160±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MR CIL_0008MR_0001 VISTA 11:1663842-2266142
CIL_0007RG CIL_0007RG_0001 VISTA 11:1668349-2271510
CIL_00097V CIL_00097V_0001 VISTA 11:1688064-2293510
CIL_00048K CIL_00048K_0001 CGP 11:1752752-1837521

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 686
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 680
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 612
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 612
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 601
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 601
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 601
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 569
ENSDART00000133319 actb1-005 protein_coding Danio_rerio 0 542
ENSDART00000054987 actb1-001 protein_coding Danio_rerio 0 542
ENSDART00000141737 actb2-001 protein_coding Danio_rerio 0 531
ENSDART00000055194 actb2-007 protein_coding Danio_rerio 0 531
ENSMUST00000034453 Acta1-201 protein_coding Mus_musculus 0 507
ENSMUST00000128055 Actg1-005 protein_coding Mus_musculus 0 488
ENSMUST00000120059 Gm5388-001 processed_pseudogene Mus_musculus 0 475
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 438
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 425
ENSMUST00000141904 Actg2-005 protein_coding Mus_musculus 0 416
ENSMUST00000121731 Actg2-002 protein_coding Mus_musculus 0 416
ENSMUST00000075161 Actg2-001 protein_coding Mus_musculus 0 416
ENSDART00000055136 actc1b-201 protein_coding Danio_rerio 0 416
ENSMUST00000184255 Gm17087-001 translated_processed_pseudogene Mus_musculus 0 407
ENSMUST00000167721 Actb-002 protein_coding Mus_musculus 0 399
ENSDART00000132497 actb2-006 retained_intron Danio_rerio 0 392
ENSMUST00000106216 Actb-006 protein_coding Mus_musculus 0 381
ENSDART00000148067 actb1-003 processed_transcript Danio_rerio 0 379
ENSMUST00000090269 Actc1-001 protein_coding Mus_musculus 0 364
ENSMUST00000119663 Gm4760-001 processed_pseudogene Mus_musculus 0 363
ENSMUST00000167386 Actb-003 processed_transcript Mus_musculus 0 357
ENSMUST00000165006 Gm17228-001 processed_pseudogene Mus_musculus 0 344
ENSDART00000141407 actb1-002 protein_coding Danio_rerio 0 339
ENSMUST00000152029 Actg2-004 protein_coding Mus_musculus 0 326
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 326
ENSMUST00000062147 Actg1-006 protein_coding Mus_musculus 0 305
ENSMUST00000165629 Actb-008 retained_intron Mus_musculus 0 294
ENSMUST00000156343 Actg1-004 retained_intron Mus_musculus 0 287
ENSMUST00000141406 Actg1-007 retained_intron Mus_musculus 0 281
ENSDART00000066430 acta2-201 protein_coding Danio_rerio 0 281
ENSMUST00000118518 Gm12003-001 processed_pseudogene Mus_musculus 0 261
ENSMUST00000184183 Gm17087-002 protein_coding Mus_musculus 0 248
ENSDART00000149990 acta2-001 protein_coding Danio_rerio 0 241
ENSMUST00000119420 Gm4918-001 processed_pseudogene Mus_musculus 0 230
ENSDART00000134924 actb2-004 retained_intron Danio_rerio 0 215
ENSDART00000135971 actb2-005 retained_intron Danio_rerio 0 215
ENSDART00000148290 actb2-002 nonsense_mediated_decay Danio_rerio 0 215
ENSMUST00000164765 Actb-005 retained_intron Mus_musculus 0 211
ENSDART00000062370 actc1a-001 protein_coding Danio_rerio 0 195
ENSDART00000114549 hm:zewp0073-201 protein_coding Danio_rerio 2.94273e-44 183
ENSDART00000080664 protein_coding Danio_rerio 2.94273e-44 183
ENSMUST00000144868 Actg1-003 retained_intron Mus_musculus 5.99994e-41 172
ENSMUST00000124933 Actg2-006 processed_transcript Mus_musculus 4e-32 143
ENSMUST00000146697 Gm8464-001 transcribed_processed_pseudogene Mus_musculus 6e-31 139
ENSMUST00000140208 Gm8464-002 processed_transcript Mus_musculus 6e-31 139
ENSMUST00000151942 Gm4750-001 transcribed_processed_pseudogene Mus_musculus 6e-31 139
ENSMUST00000152262 Gm4750-002 processed_transcript Mus_musculus 6e-31 139
ENSMUST00000099636 Actg-ps1-201 processed_pseudogene Mus_musculus 2e-30 137
ENSMUST00000163829 Actb-004 protein_coding Mus_musculus 8e-30 135

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